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GemaCoreLib
The GeMA Core library
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GemaCoreLib
The GeMA Core library
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Especialization of the GmSingleAppendBuffer class using the GmSparseMatrixTripletBuffer interface. More...
#include <gmSparseMatrixTripletData.h>
Public Member Functions | |
| GmSparseMatrixSingleTripletBuffer (size_t initSize, double resizeFactor=2.0, int numThreads=-1) | |
| Buffer constructor. See the description for the GmSingleAppendBuffer constructor. | |
| virtual GmSparseMatrixTripletData< T > * | sortedData (int nlin, GmSparseMatrixTripletBufferSortStrategy st) |
| Similar to data() but returning a sorted vector, obtained by using the given strategy. The nlin parameter should inform the number of lines of the matrix and is used as the maximum value stored for a line or column in the triplet data. More... | |
 Public Member Functions inherited from GmSingleAppendBuffer< GmSparseMatrixTripletData< T >, GmSparseMatrixTripletBuffer< T > > | |
| GmSingleAppendBuffer (size_t initSize, double resizeFactor=2.0, int numThreads=-1) | |
| Buffer constructor. Can optionally pre allocate the buffer with initSize entries. If initSize is zero, a call to reserve() MUST be made before any append. The given resizeFactor controlls how the buffer grows in case of a resize. See the class comments for additional info. More... | |
| ~GmSingleAppendBuffer () | |
| Destructor. Releases the allocated memory. | |
| virtual void | clear () |
| virtual void | reserve (size_t bsize) |
| See comments on the base class. Should not be called if the size was given in the constructor. | |
| virtual void | append (const GmSparseMatrixTripletData< T > &val) |
| virtual void | appendFromThread (int tid, const GmSparseMatrixTripletData< T > &val) |
| virtual size_t | size () const |
| virtual GmSparseMatrixTripletData< T > * | data () |
| virtual size_t | usedMemory () const |
| Public Member Functions inherited from GmAppendBuffer< GmSparseMatrixTripletData< T > > | |
| virtual | ~GmAppendBuffer () |
| Virtual destructor. | |
Additional Inherited Members | |
| Static Public Member Functions inherited from GmSparseMatrixTripletBuffer< T > | |
| static int | strToSortStrategy (const QString &str) |
| Returns the sort strategy associated with the given string. Returns -1 if no match was found. | |
| static const char * | sortStrategyToStr (GmSparseMatrixTripletBufferSortStrategy st) |
| Returns the string used to define the given sort strategy. | |
| Protected Member Functions inherited from GmSingleAppendBuffer< GmSparseMatrixTripletData< T >, GmSparseMatrixTripletBuffer< T > > | |
| void | clearList () |
| Protected Attributes inherited from GmSingleAppendBuffer< GmSparseMatrixTripletData< T >, GmSparseMatrixTripletBuffer< T > > | |
| ControllData * | _head |
| Pointer to the first allocated buffer. | |
| double | _resizeFactor |
| The resize factor. | |
| QAtomicInteger< size_t > | _nextIndex |
| The next free index in the global vector. | |
| QAtomicPointer< ControllData > | _controll |
| The controll block pointing to the current buffer. | |
| GmSpinLock | _controllLock |
| The lock controlling changes to _controll. | |
| GmSparseMatrixTripletData< T > * | _dataBuffer |
| The single buffer after a call to data() | |
| int | _nt |
| Number of threads considered for parallel memcopy. | |
Especialization of the GmSingleAppendBuffer class using the GmSparseMatrixTripletBuffer interface.
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virtual |
Similar to data() but returning a sorted vector, obtained by using the given strategy. The nlin parameter should inform the number of lines of the matrix and is used as the maximum value stored for a line or column in the triplet data.
IMPORTANT: You should not mix calls to data() and sortedData() without a call to clear() in between.
Implements GmSparseMatrixTripletBuffer< T >.
1.8.15